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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 338aa MW: 37323.9 Da PI: 7.2216 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.1 | 2.3e-25 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ltpsd++++g +++ +++a+e+ ++ +++ +l+ +d++g +W++++i+r++++r++lt+GW+ Fv++++L +gD vvF + +++el+ 462882129 166 FCKTLTPSDTSTHGGFSVLRRHANEClppldmtQLTPTQ--ELVAKDLHGMEWRFRHIFRGRPRRHLLTSGWSAFVSSKRLVAGDAVVFL--RGENGELR 261 99****************************987777666..8************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ 462882129 262 VGVRRA 267 ***996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-38 | 157 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-41 | 159 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.89E-24 | 165 | 266 | No hit | No description |
SMART | SM01019 | 3.0E-24 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-23 | 166 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
VVTVDCFPPA RLPLPSSFQL PPSASAPDPW QMLAAAMEPS PTPQPASYSG DQLYSALWRA 60 CAGPLATVPR PGDLVFYFLQ GHIEQVEADT NQVVQNQTRL YNLPSKMLCR VLNVELKAEP 120 DTDEVYAQIM LMAEPERCLL GLEVAAAETA SSGSIATPPR PAVSSFCKTL TPSDTSTHGG 180 FSVLRRHANE CLPPLDMTQL TPTQELVAKD LHGMEWRFRH IFRGRPRRHL LTSGWSAFVS 240 SKRLVAGDAV VFLRGENGEL RVGVRRAMRQ LSNVPSLVIS SQSLHLEVLA TAWHGINTGH 300 MFTVYYKPRY GDTSDDVISS CGFYILMYLV VRLPCEKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-115 | 44 | 325 | 10 | 281 | Auxin response factor 1 |
4ldy_B | 1e-115 | 44 | 325 | 10 | 281 | Auxin response factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971147.1 | 1e-149 | PREDICTED: auxin response factor 4-like isoform X1 | ||||
Swissprot | Q5JK20 | 1e-142 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | K3XEZ7 | 1e-150 | K3XEZ7_SETIT; Auxin response factor | ||||
STRING | Si000340m | 1e-149 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-115 | auxin response factor 2 |